miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|148311617|gb|ES571510.1|ES571510 TAGTTACGGGGGGAAAATGAGAATTCACCACGTTTAGCGATAACGGCCCGGCTACCAAAGATCTATCTAGAAACTTGGAT
ACTTGTCGGAAGAATTATTATTTATTAATACTAACGCATATTTCTTTTACATTTGAGAGCAATATAAACAAGATCACCGA
GAATGAAGATCTGGTCTTCTATAATTCTGATGGCTGCCCTTTTGCTAATGACATCACTGGCAGCTGACTTTGAAGAAAAG
GACGATGCTGAGGATGGGATAGTAGAGGTTGAAGATGAAGTTGTTTTTGAAAAAGAAAGGCCTGTTTATGAAAGACCTGT
ACCAAGTGGTGCAACATATTTTCTCGAGCCATTTGATACAAGGGCTGAATTTTTAAAGAGATGGGTTCAATCACAAGCCA
AAAAAGATGGCGCTGAAGATCATCTTGCTAAGTATGATGGTAAATGGGCTGTTGAAGAAGCAAGAGAAAATCCAATAATC
AGAGATTTGGGCCTTATTCTTAAGACCAAGGCAAAGCATCATGCTATCGCAGCAAAGCTGGATAAACCTTTTGATTTTAA
TGGGAAACCATTGATTGTTCAGTATGAAGTTAAATTTCAAAATGGCATAGACTGTGGTGGTGCATACATCAAACTGCTCT
CAAAAGGGGAGCAGCCGCTCAATCTGAAAGCATTCACTGATAAGACACCCTATACTATTATGTTTGGACCTGACAAATGT
GGCAATGATCATAAGCTCCATTTTATATTCCGTCACAAGAACCCCAAAACTGGACAATATGAGGAAAAGCATGCTGAG




Most similar to sp|P27824|CALX_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P27824|CALX_HUMAN Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2
          Length = 592

 Score =  201 bits (510), Expect = 6e-51
 Identities = 99/164 (60%), Positives = 116/164 (70%)
 Frame = +1

Query: 307 YERPVPSGATYFLEPFDTRAEFLKRWVQSQAKKDGAEDHLAKYDGKWAVEEARENPIIRD 486
           Y+ PVP+G  YF + FD     L  W+ S+AKKD  +D +AKYDGKW VEE +E+ +  D
Sbjct: 60  YKAPVPTGEVYFADSFDRGT--LSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPGD 117

Query: 487 LGLXXXXXXXXXXXXXXXDKPFDFNGKPLIVQYEVKFQNGIDCGGAYIKLLSKGEQPLNL 666
            GL               +KPF F+ KPLIVQYEV FQNGI+CGGAY+KLLSK  + LNL
Sbjct: 118 KGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPE-LNL 176

Query: 667 KAFTDKTPYTIMFGPDKCGNDHKLHFIFRHKNPKTGQYEEKHAE 798
             F DKTPYTIMFGPDKCG D+KLHFIFRHKNPKTG YEEKHA+
Sbjct: 177 DQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAK 220